BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019C01SP1|AL427449
(677 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1365 1130 0.0
>3x_Contig1365
Length = 9349
Score = 1130 bits (560), Expect = 0.0
Identities = 641/677 (94%), Gaps = 1/677 (0%)
Strand = Plus / Plus
Query: 1 aacaagaaaactcggcacatcagacgcatttdaacccacaccagggttaccagcggctac 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 4957 aacaagaaaactcggcacatcagacgcatttaaacccacaccagggttaccag-ggctac 5015
Query: 61 cagggtttccaagggttccatcaaatgaacaacatacacgatttctccctatctgatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5016 cagggtttccaagggttccatcaaatgaacaacatacacgatttctccctatctgatgag 5075
Query: 121 attgacgacctgattaagcragtgtttggtttcggcacttggratatrarcccgagctac 180
||||||||||||||||||| |||||||||||||| ||||||| |||| | ||||||||||
Sbjct: 5076 attgacgacctgattaagcaagtgtttggtttcgacacttggaatataaacccgagctac 5135
Query: 181 caagtttgargaaaggnggaggaccgttgtggtgctgaattgcacgtgatattcacgtgc 240
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5136 caagtttgaagaaaggaggaggaccgttgtggtgctgaattgcacgtgatattcacgtgc 5195
Query: 241 aattttttaagrdrgaracgactttccgccgtttcttttattttccattaagtcatcttc 300
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5196 aattctttaaaaaagaaacgactttccgccgtttcttttattttccattaagtcatcttc 5255
Query: 301 ccttagtaagcacttttcttttttttgacccccgttactggcgtcaggcgacacagaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5256 ccttagtaagcacttttcttttttttgacccccgttactggcgtcaggcgacacagaaat 5315
Query: 361 caacgcaccatctgatgtctctggcttctcttccccccaaaacagttccatggtaaccrg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5316 caacgcaccatctgatgtctctggcttctcttccccccaaaacagttccatggtaaccag 5375
Query: 421 tgacatacggccggagagcrgagagagtgacatgattgarctgagagtgggtaagrrgag 480
|||||||||||| || ||| ||| |||| |||||||||| ||| |||||||||| | |
Sbjct: 5376 tgacatacggccagaaagcagagtgagtaacatgattgaactgtgagtgggtaaaatgtg 5435
Query: 481 gctaakrgggacctcggccatgggataaccatgaccgaacaccccactgctaagaggctt 540
||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 5436 gctaaatgggaccttggccattgaataaccatgaccgaacaccccactgctaagaggctt 5495
Query: 541 gtgaagtcacttacgaatcgcactattgctgacggcaattgacctttacttcgggctttc 600
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5496 gtaaagtcacttacaaatcgcactattgctgacggcaattgacctttacttcgggctttc 5555
Query: 601 tttcaccttgagttttgtcttacttttgtgttatgtcaagaaaaaaaaaaatcaaaaaga 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5556 tttcaccttgagttttgtcttacttttgtattatgtcaagaaaaaaaaaaatcaaaaaga 5615
Query: 661 taccagaaaamacggag 677
|||||||||| ||||||
Sbjct: 5616 taccagaaaacacggag 5632
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9444
Number of Sequences: 1807
Number of extensions: 9444
Number of successful extensions: 278
Number of sequences better than 1.0e-20: 1
length of query: 677
length of database: 10,358,551
effective HSP length: 16
effective length of query: 661
effective length of database: 10,329,639
effective search space: 6827891379
effective search space used: 6827891379
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 49 (99.3 bits)